Maximum-entropy network inference30 days ago
Directed food web | Fixed degree sequences | Reproducibility | Reference
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MetaWeave: rationale, methods, and simulation30 days ago
Rationale | Core workflow | Inference methods | Block model | Species probability matrix | Simulated example | Create a landscape and distributions | Define a block-level interaction model | Reconstruct local networks | Simulating interaction observations | Standardizing a network metric | Using a species-level probability matrix | Interpretation and limits
Reconstructing palm-mammal networks with MetaWeave30 days ago
1. Load packages and data | 2. Clean species ranges | 3. Match ranges and interactions | 4. Build an observed-metaweb baseline | 5. Fit a stochastic block model | 6. Reconstruct and map local SBM networks | 7. Species-pair representation of the retained fit
Reconstructing palm-mammal networks with MetaWeave30 days ago
1. Load packages and data | 2. Clean species ranges | 3. Match ranges and interactions | 4. Build an observed-metaweb baseline | 5. Fit a stochastic block model | 6. Reconstruct and map local SBM networks | 7. Species-pair representation of the retained fit
MetaWeave architecture2 months ago
Vision | Object pipeline | Pluggable inference | Design boundaries